PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G108300.2 | ||||||||
Common Name | POPTR_0004s10800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CO-like | ||||||||
Protein Properties | Length: 370aa MW: 40786.5 Da PI: 6.2445 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.4 | 2.6e-07 | 15 | 60 | 2 | 41 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++r+C+++ + + +C+ ++ +lC+ C H H++v+ Potri.004G108300.2 15 RARVCDTCRAAPCTVYCRADSAYLCAGCDARVHAAnrvasrHERVS 60 6899*****************************6577888898887 PP | |||||||
2 | zf-B_box | 27.6 | 6.1e-09 | 59 | 104 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ l C+ + lC C +H+ H++vp+ Potri.004G108300.2 59 VSVCEACERAPAALLCKADAASLCTACDADIHSAnplarrHQRVPI 104 579*****************************66899999**9997 PP | |||||||
3 | CCT | 69.1 | 1.2e-23 | 300 | 343 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Potri.004G108300.2 300 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRK 343 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.462 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-5 | 15 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.56E-7 | 17 | 61 | No hit | No description |
PROSITE profile | PS50119 | 11.59 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.6E-7 | 59 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.48E-8 | 61 | 104 | No hit | No description |
SMART | SM00336 | 3.8E-10 | 62 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.648 | 300 | 342 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.7E-17 | 300 | 342 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MLKQESSGGG GGDNRARVCD TCRAAPCTVY CRADSAYLCA GCDARVHAAN RVASRHERVS 60 VCEACERAPA ALLCKADAAS LCTACDADIH SANPLARRHQ RVPILPISGC LHGSPVGPAA 120 GETEDRFTTQ EGEETISEEE EDEAASWLLL NPVKNSKNQN NNGFLFGGEV DEYLDLVEYN 180 SCTENQCSDQ YNQQHYCVPP KSYGGDRAVP IQYGEGKDHQ QQRQYHNFQL GLEYEPSKAA 240 CSYNGSISQS VSMSSMDVGV VPESTMSEIS ISQHRPPKGT MELFSSTAIQ MPSQLSPMDR 300 EARVLRYREK KKTRKFEKTI RYASRKAYAE TRPRIKGRFA KRKDVEVEDD QMFSSTLMAE 360 TGYGIVPSF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12828 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G108300.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY515151 | 0.0 | AY515151.1 Populus deltoides CONSTANS-like protein CO2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024447845.1 | 0.0 | zinc finger protein CONSTANS-LIKE 2 | ||||
Refseq | XP_024454227.1 | 0.0 | zinc finger protein CONSTANS-LIKE 2-like | ||||
Swissprot | Q96502 | 1e-141 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | B9H3V0 | 0.0 | B9H3V0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s10800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3827 | 33 | 52 | Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-102 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G108300.2 |
Entrez Gene | 7468389 |
Publications ? help Back to Top | |||
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