PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G088900.1
Common NamePOPTR_0004s08770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 335aa    MW: 36655 Da    PI: 6.3702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G088900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09244287755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  Potri.004G088900.1 244 IAAKNRRERISERLKVLQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 287
                         6779*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13238296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-12239295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-11243291No hitNo description
SMARTSM003536.1E-12243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-7244287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MALAKDRMGS VQTCPYNGNV MGDFSSMGSY GFDEYQKVAF YEEGNSTFEK TSGLMIKNLA  60
MTSSPSSLGS PSSAISGELV FQATDHQAEE AHSLISFKGI GFDNIMHNNG SLLSFEQSNR  120
VSQTSSQKDD YSAWEGNLSY NYQWNEMNPK CNTSPRLMED FNCFQRAGNF ISMTGKENHG  180
DWLYAESTIV ADSIQDSATP DASSFHKRPN MGESMQALKK QCNNATKKPK PKSAAGPAKD  240
LQSIAAKNRR ERISERLKVL QDLVPNGSKV DLVTMLEKAI SYVKFLQLQV KVLATDELWP  300
VQGGKAPDIS QVKEAIDALL SSQTKDGNSS SSPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G088900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305203.20.0putative transcription factor bHLH086
TrEMBLA0A2K2ARY40.0A0A2K2ARY4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s08770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.14e-63RHD SIX-LIKE 1