PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G088100.1 | ||||||||
Common Name | POPTR_0004s08650g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 27139.6 Da PI: 9.3122 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.2e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t+Ed++l+d+++ +G g+W++ ++ g++R++k+c++rw +yl Potri.004G088100.1 13 KGAWSTQEDQKLIDYIQTHGEGCWRSLPEAAGLHRCGKSCRLRWINYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 1e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Potri.004G088100.1 66 RGNFGQDEEDLIIKLHALLGNR-WALIAGRLP-GRTDNEVKNYWNSHL 111 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.475 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.26E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-10 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.87 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-26 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MRKPCCDKQG NNKGAWSTQE DQKLIDYIQT HGEGCWRSLP EAAGLHRCGK SCRLRWINYL 60 RPDIKRGNFG QDEEDLIIKL HALLGNRWAL IAGRLPGRTD NEVKNYWNSH LKKKLINMGI 120 DPNNHRLNQI LPRLQAEPAA PVIAISTTTG SKNNVAASKP KNLSNGDSDR VSDTATCLED 180 EYESLVTQQA ATSGSSSINI DLNIAAPASP GHRTTFGNKQ QNCKLGKTSQ VERDPSSLPT 240 LLLFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 12 | 115 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G088100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP723392 | 0.0 | KP723392.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB flavonoid repressor protein (MYB182) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305872.1 | 0.0 | transcription repressor MYB6 | ||||
Swissprot | Q38851 | 5e-74 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | B9H397 | 0.0 | B9H397_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s08650.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-76 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G088100.1 |
Entrez Gene | 7493553 |