PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G081000.1
Common NamePOPTR_0004s07910g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 681aa    MW: 77446.2 Da    PI: 5.7239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G081000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.41.9e-5561331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yL++k++++++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd
  Potri.004G081000.1   6 LPPGFRFHPTDEELVAYYLRRKINAHRIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKD 95 
                         79****************************.99***************6434555777********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v+s + ++vg+kktLv+y+grap+g +t Wvmheyrl
  Potri.004G081000.1  96 RKVIS-QMRAVGMKKTLVYYRGRAPHGARTGWVMHEYRL 133
                         *****.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-624155IPR003441NAC domain
PROSITE profilePS5100560.6296156IPR003441NAC domain
PfamPF023659.4E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLRRKINA HRIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVIS QMRAVGMKKT LVYYRGRAPH  120
GARTGWVMHE YRLDERECEI NTGLQDAYAL CRVSKRTANI PKIGEHYDST TNQMPCEHSS  180
SIEQYSENHG RCEEYESTNY TMHRNVGNCS TSYRAIGSPL NIGESRNGKW IQSMDGSFGM  240
SAPQFPNYST VPYPPSKVDI ALECARLQHR FTLPPLEVED FPQFGFTDIK MMHQPSMPES  300
TSTHQTDILQ EILSVAHASQ ELINQSSFQD TWGGNYATAD HDFTFMAGKD VQHNVYSDMM  360
MNSTRWADKP WVDPSTSSMS IEMSDLDETF KAERMVENLR WVGMSNDELE KSFTEETKIV  420
PIENISNFRS REEHGVLGEN EHTGDCMRFN DSEDFSLGFI NDEPNDDNFI EESNIVDDLA  480
SSPSFEVVEE IKVNHGLFVS TRQATETFFH QLVPSQTVKI YLNPAVVAAN FSIEKVENSQ  540
RYDKKPSKTT AKENFTGRKS SAQYPWRYLS SNVVCMIVIL LMHCFYLGEN VENGKLTDDF  600
MRSGSVEEEG FCPSKNVNPM KKPAGKLIIK RDDNEKEKDL LVTIRGGEGS KLGLFLKKLG  660
LFLTISFALC TILANHAMAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-53213311140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G081000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305903.10.0NAC domain-containing protein 86
RefseqXP_024454966.10.0NAC domain-containing protein 86
TrEMBLA0A3N7EWK80.0A0A3N7EWK8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Representative plantOGRP87171015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-157NAC domain containing protein 28