PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G078200.2 | ||||||||
Common Name | POPTR_0004s07640g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 828aa MW: 92134.8 Da PI: 6.4775 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.8e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Potri.004G078200.2 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 213 99*****************************86555544..8************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ Potri.004G078200.2 214 -WNEKNQLLLGIRRA 227 .8899999****997 PP | |||||||
2 | Auxin_resp | 118.7 | 4.8e-39 | 252 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Potri.004G078200.2 252 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 335 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-49 | 110 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-41 | 119 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.50E-21 | 125 | 226 | No hit | No description |
Pfam | PF02362 | 2.0E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-23 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.308 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-34 | 252 | 335 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.11E-6 | 712 | 792 | No hit | No description |
Pfam | PF02309 | 3.0E-8 | 715 | 805 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.191 | 718 | 802 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 828 aa Download sequence Send to blast |
MKLSTSGLGG QQAGEKKCLN SELWHACAGP LVSLPTAGSR VVYFPQGHSE QVAATTNKEV 60 DAHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPQEQKETF LPMDLGMPSK 120 QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELIARD LHDVEWKFRH 180 IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRATRP QTVMPSSVLS 240 SDSMHIGLLA AAAHAAATNS CFTVFYNPRA SPSEFVIPLS KYIKAVFHTR ISVGMRFRML 300 FETEESSVRR YMGTITGISD LDPVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT 360 FPMYPSLFPL RLKRPWHPGS PSLLDSRDEA SNGLMWLRGG SGEPGLPSLN FQANMLPWMQ 420 QRLDPTMLGN DHNQRYQAML AAGMQNLGSG DPLRQQFMQL QQPFQYLQQS SSHNPLLQLQ 480 QQQQQQAIQQ SIPHNILQAQ NQISTESLPR HLLQQQLNNQ PGDQAQQHQH IYHDGLQIQT 540 DQLQRQQSNL PSPSFSKTEY MDSSSKFSAT NTPMQNMLGS LCSEGSVNLL DFSRAGQSTL 600 TEQLPQQSWV PKYAHQEVNA FANSISLPRT YPEKDPSMEA ENCSSDAQNP TLFGANIDSS 660 GLLLPTTVPR YSTSSIDADV SSMPLGDSGF QNSLYGCVQD SSELLSNAGQ MDPPTPSGTF 720 VKVYKSGSVG RSLDISRFSS YHELRGELAQ MFGIEGKLEN PHRSGWQLVF VDRENDVLLL 780 GDDPWELFVN NVWYIKILSP EDVLKLGEQG VEPSGPNAVH RMSGGVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 8 | 356 | 40 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.15713 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G078200.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147915 | 0.0 | EF147915.1 Populus trichocarpa clone WS0125_O23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454964.1 | 0.0 | auxin response factor 8 | ||||
Refseq | XP_024454965.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A2K2ARF4 | 0.0 | A0A2K2ARF4_POPTR; Auxin response factor | ||||
STRING | POPTR_0017s01870.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G078200.2 |
Entrez Gene | 7487430 |