PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G065800.8 | ||||||||
Common Name | POPTR_0004s06440g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 464aa MW: 50500.1 Da PI: 8.49 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125 | 8.3e-39 | 79 | 237 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssss 69 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ ai el+ + +++s Potri.004G065800.8 79 SGGKDRHSKVWTSQGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAQDAINELPPLnhsfpdtpkqlsdekrtsdgteqGFDS 169 689*************************************************************999998888888877777666654444 PP TCP 70 asec.....eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133 a ++ + ++s++++++ s +k+a s++++ ++ + + a++ ++sr kar+rarert++++ ++ Potri.004G065800.8 170 A-DVelndpNFSQSQNQNQHLSLSKSACSSTSETSKGSGLSLARSGIRDSRVKARERARERTAKEKEND 237 4.2222211333344444433333444444444444444444455555999*********999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-44 | 80 | 235 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.251 | 81 | 139 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.57 | 216 | 234 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MEAEEIQRQP CKFSRVGNGR NDSSRIAQNG YGDHQYPDEE EDGGVKRSNP NNGGGAGGTI 60 NRLREWHHSS RIIRVSRASG GKDRHSKVWT SQGLRDRRVR LSVTTAIQFY DLQDRLGYDQ 120 PSKAVEWLIK AAQDAINELP PLNHSFPDTP KQLSDEKRTS DGTEQGFDSA DVELNDPNFS 180 QSQNQNQHLS LSKSACSSTS ETSKGSGLSL ARSGIRDSRV KARERARERT AKEKENDSRI 240 AHHHNINPIS QNSTFTELLT GGIGSVSNNN NSNSSSSNNN NAASPSEANL FQKAAAARQW 300 LSTPMDYIST GLLGPSSSRT THHSSGFPGQ IQLGNSIPQP MTMSVPPFNV SGENHQEQLQ 360 HFPFISDHLM PVAATTQTVG DYNLNFTISS SLAAGFNRGT LQSNSSSPSL FSHLQRFSTS 420 SPIDGSTTNV PFLIGAPQQF PHGLQLCYGD GTRHSDQKGK GKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-23 | 86 | 140 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-23 | 86 | 140 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G065800.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305700.2 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024455006.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024455007.1 | 0.0 | transcription factor TCP2 | ||||
TrEMBL | B9H2A9 | 0.0 | B9H2A9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s06440.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G065800.8 |
Entrez Gene | 7470181 |