PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G064300.4 | ||||||||
Common Name | POPTR_0004s06300g, PTAG1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27559.1 Da PI: 9.7797 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98 | 3.9e-31 | 24 | 74 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Potri.004G064300.4 24 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74 79***********************************************95 PP | |||||||
2 | K-box | 115.3 | 5.9e-38 | 92 | 188 | 5 | 100 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 s++ ++ea+a+++qqe+akL+++i nLq+++Rh+lGe L+sLs+keL++Le +Lek++++iRskKnell+++ie++qk+e +l+++n+ L Potri.004G064300.4 92 SNTGsVSEANAQYYQQEAAKLRSQIGNLQNSNRHMLGEALSSLSVKELKSLEIRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLL 182 344459************************************************************************************* PP K-box 95 rkklee 100 r+k+ e Potri.004G064300.4 183 RAKISE 188 ***976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-40 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.263 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-33 | 17 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.40E-43 | 17 | 93 | No hit | No description |
PRINTS | PR00404 | 1.6E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-28 | 100 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.32 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEYQNESLES SPLRKLGRGK VEIKRIENTT NRQVTFCKRR SGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYSNDSVKST IERYKKASAD SSNTGSVSEA NAQYYQQEAA KLRSQIGNLQ 120 NSNRHMLGEA LSSLSVKELK SLEIRLEKGI SRIRSKKNEL LFAEIEYMQK REVDLHNNNQ 180 LLRAKISENE RKRQSMNLMP GGADFEIVQS QPYDSRNYSQ VNGLQPASHY SHQDQMALQL 240 V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
5f28_A | 4e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_B | 4e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_C | 4e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_D | 4e-20 | 16 | 84 | 1 | 69 | MEF2C |
6c9l_A | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12450 | 0.0 | bud| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G064300.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ714386 | 0.0 | JQ714386.1 Populus simonii x Populus nigra isolate A flowering locus C (FLC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455023.1 | 1e-176 | floral homeotic protein AGAMOUS | ||||
Refseq | XP_024455024.1 | 1e-176 | floral homeotic protein AGAMOUS | ||||
Refseq | XP_024455025.1 | 1e-176 | floral homeotic protein AGAMOUS | ||||
Swissprot | Q40872 | 1e-133 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | I0BW92 | 1e-175 | I0BW92_9ROSI; Flowering locus C | ||||
TrEMBL | O65111 | 1e-175 | O65111_POPTR; AGAMOUS homolog | ||||
STRING | EOY27872 | 1e-151 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-110 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G064300.4 |
Entrez Gene | 7470186 |
Publications ? help Back to Top | |||
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