PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G064300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 276aa MW: 31400.7 Da PI: 10.0171 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.7 | 4.9e-31 | 24 | 74 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Potri.004G064300.1 24 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74 79***********************************************95 PP | |||||||
2 | K-box | 114.8 | 7.9e-38 | 92 | 188 | 5 | 100 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 s++ ++ea+a+++qqe+akL+++i nLq+++Rh+lGe L+sLs+keL++Le +Lek++++iRskKnell+++ie++qk+e +l+++n+ L Potri.004G064300.1 92 SNTGsVSEANAQYYQQEAAKLRSQIGNLQNSNRHMLGEALSSLSVKELKSLEIRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLL 182 344459************************************************************************************* PP K-box 95 rkklee 100 r+k+ e Potri.004G064300.1 183 RAKISE 188 ***976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-40 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.263 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.91E-43 | 17 | 93 | No hit | No description |
SuperFamily | SSF55455 | 6.54E-33 | 17 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-28 | 100 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.32 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MEYQNESLES SPLRKLGRGK VEIKRIENTT NRQVTFCKRR SGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYSNDSVKST IERYKKASAD SSNTGSVSEA NAQYYQQEAA KLRSQIGNLQ 120 NSNRHMLGEA LSSLSVKELK SLEIRLEKGI SRIRSKKNEL LFAEIEYMQK REVDLHNNNQ 180 LLRAKISENE RKRQSMNLMP GGADFEIVQS QPYDSRNYSQ VNGLQPASHY SHQDQMALQL 240 LIISKCSSFS HFHIPWRVPG FPLSAKATCM LKNLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-20 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12450 | 0.0 | bud| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G064300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ714386 | 0.0 | JQ714386.1 Populus simonii x Populus nigra isolate A flowering locus C (FLC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024455023.1 | 1e-175 | floral homeotic protein AGAMOUS | ||||
Refseq | XP_024455024.1 | 1e-175 | floral homeotic protein AGAMOUS | ||||
Refseq | XP_024455025.1 | 1e-175 | floral homeotic protein AGAMOUS | ||||
Swissprot | Q40872 | 1e-131 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | I0BW92 | 1e-173 | I0BW92_9ROSI; Flowering locus C | ||||
TrEMBL | O65111 | 1e-173 | O65111_POPTR; AGAMOUS homolog | ||||
STRING | EOY27872 | 1e-149 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-109 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G064300.1 |