PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G060900.1
Common NamePOPTR_0004s05920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 263aa    MW: 29293.5 Da    PI: 5.6332
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G060900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-3075133259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  Potri.004G060900.1  75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSKLDPTMLVVTYSCEHNHP 133
                         69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.91569135IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-3170135IPR003657WRKY domain
SuperFamilySSF1182905.89E-2671135IPR003657WRKY domain
SMARTSM007743.6E-3574134IPR003657WRKY domain
PfamPF031067.2E-2676133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDSRFIINPL ICEQEENDNS TQESGPESSP SNDMKMASTS SPKRSKKAMQ KRIVSVPIKD  60
LEGPRLKGEN ASPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSKLDPT  120
MLVVTYSCEH NHPWPPPSRS THHHNSSPKH NTTKPEVSAT QPENPESEPE EKFTDLGNGE  180
PLISNTTTSD EFSWFGVMET TSSTILETPI FAEAEADADM ASMFFPMREE DESLFADLGE  240
LPECSSVFRH HRRGVGPQVQ TC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-2151135679Disease resistance protein RRS1
5w3x_D4e-2151135679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G060900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774280.0GQ377428.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305730.10.0probable WRKY transcription factor 65 isoform X1
RefseqXP_024454627.10.0probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP567e-87WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLB9H2F30.0B9H2F3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s05920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-83WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]