PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G051800.1
Common NamePOPTR_0004s05110g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 277aa    MW: 30784.2 Da    PI: 5.003
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G051800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19119169255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  Potri.004G051800.1 119 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYDKAALRIRG 169
                         7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-31118178IPR001471AP2/ERF domain
CDDcd000182.15E-29119177No hitNo description
SuperFamilySSF541713.6E-23119179IPR016177DNA-binding domain
SMARTSM003808.6E-37119183IPR001471AP2/ERF domain
PfamPF008471.4E-14119169IPR001471AP2/ERF domain
PROSITE profilePS5103223.815119177IPR001471AP2/ERF domain
PRINTSPR003673.4E-11120131IPR001471AP2/ERF domain
PRINTSPR003673.4E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTIQSDHRAA SEGILENVWA SYIGEDRGDI GISNSEQEVS KSWQDLPSLD RRDESMEALQ  60
RLPSLGRWIS MGAETWEELL DGIIPEINDT CNDSAENKGP SSLSSKASAV KVEKVTTRHY  120
RGVRRRPWGK YAAEIRDSSR KGARVWLGTF ETAEEAALAY DKAALRIRGP KTYLNFPLET  180
VAKAMCIDCS KNDSNVLSTT NSQGNNTSCT FPGSSDKVSV IHRKRASRDW EVKSESTMME  240
QPGLKRTARV EELYANDVVE FQDLGSDYLD SLLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-28118178161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G051800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305098.20.0ethylene-responsive transcription factor ERF091
TrEMBLB9H2N00.0B9H2N0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s05110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.13e-36ERF family protein