PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G049500.1
Common NamePOPTR_0004s04920g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 342aa    MW: 38565.7 Da    PI: 8.539
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G049500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.8e-51111391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtd+el+ +yLkkkv++++ ++ ++i++vdiyk++PwdLp k+  +e+ew+fFs+rd+ky++g r+nra+ sgyWkatg+dk+
  Potri.004G049500.1  11 LPPGFRFHPTDQELIIHYLKKKVSSSSYPEVSIIADVDIYKFNPWDLPGKALFGENEWFFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKP 101
                         79*************************999999***************8777899************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++ +++  g+kk Lvfykgr pkg+kt+W+m eyrl
  Potri.004G049500.1 102 ILTSnGSQCLGVKKALVFYKGRPPKGTKTSWLMLEYRL 139
                         **99556669**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-624166IPR003441NAC domain
PROSITE profilePS5100559.83711166IPR003441NAC domain
PfamPF023652.4E-2512139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MERMNMSSPE LPPGFRFHPT DQELIIHYLK KKVSSSSYPE VSIIADVDIY KFNPWDLPGK  60
ALFGENEWFF FSPRDRKYPN GVRPNRAAGS GYWKATGTDK PILTSNGSQC LGVKKALVFY  120
KGRPPKGTKT SWLMLEYRLL DDTHHLHRLR GSMRLDDWVL CRVRQKSNTQ QNGESLCSSF  180
GSFSPFISFG CLQGQEMFKK SNTLKDYYYD LQPCLLAPPE SKEADEQELV EFQEVSLGYP  240
ISGVDSNSQP TMVSTVKERL EYIKKILSIG AFEELVPATP KKRLHVSSSN KAENECLFEE  300
TPSPPKKRLH ISSSNNATSE SIFEVSSPTV SASSQRSFQS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-68617112170NO APICAL MERISTEM PROTEIN
1ut4_B8e-68617112170NO APICAL MERISTEM PROTEIN
1ut7_A8e-68617112170NO APICAL MERISTEM PROTEIN
1ut7_B8e-68617112170NO APICAL MERISTEM PROTEIN
3swm_A8e-68617115173NAC domain-containing protein 19
3swm_B8e-68617115173NAC domain-containing protein 19
3swm_C8e-68617115173NAC domain-containing protein 19
3swm_D8e-68617115173NAC domain-containing protein 19
3swp_A8e-68617115173NAC domain-containing protein 19
3swp_B8e-68617115173NAC domain-containing protein 19
3swp_C8e-68617115173NAC domain-containing protein 19
3swp_D8e-68617115173NAC domain-containing protein 19
4dul_A8e-68617112170NAC domain-containing protein 19
4dul_B8e-68617112170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G049500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840831e-167AC184083.2 Populus trichocarpa clone Pop1-56J5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305109.10.0protein FEZ
TrEMBLB9H2P90.0B9H2P9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1781747
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-75NAC domain containing protein 25