PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.004G049500.1 | ||||||||
Common Name | POPTR_0004s04920g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 38565.7 Da PI: 8.539 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.5 | 3.8e-51 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtd+el+ +yLkkkv++++ ++ ++i++vdiyk++PwdLp k+ +e+ew+fFs+rd+ky++g r+nra+ sgyWkatg+dk+ Potri.004G049500.1 11 LPPGFRFHPTDQELIIHYLKKKVSSSSYPEVSIIADVDIYKFNPWDLPGKALFGENEWFFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKP 101 79*************************999999***************8777899************************************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +l++ +++ g+kk Lvfykgr pkg+kt+W+m eyrl Potri.004G049500.1 102 ILTSnGSQCLGVKKALVFYKGRPPKGTKTSWLMLEYRL 139 **99556669**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-62 | 4 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.837 | 11 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-25 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MERMNMSSPE LPPGFRFHPT DQELIIHYLK KKVSSSSYPE VSIIADVDIY KFNPWDLPGK 60 ALFGENEWFF FSPRDRKYPN GVRPNRAAGS GYWKATGTDK PILTSNGSQC LGVKKALVFY 120 KGRPPKGTKT SWLMLEYRLL DDTHHLHRLR GSMRLDDWVL CRVRQKSNTQ QNGESLCSSF 180 GSFSPFISFG CLQGQEMFKK SNTLKDYYYD LQPCLLAPPE SKEADEQELV EFQEVSLGYP 240 ISGVDSNSQP TMVSTVKERL EYIKKILSIG AFEELVPATP KKRLHVSSSN KAENECLFEE 300 TPSPPKKRLH ISSSNNATSE SIFEVSSPTV SASSQRSFQS S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-68 | 6 | 171 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-68 | 6 | 171 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-68 | 6 | 171 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-68 | 6 | 171 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-68 | 6 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swm_B | 8e-68 | 6 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swm_C | 8e-68 | 6 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swm_D | 8e-68 | 6 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swp_A | 8e-68 | 6 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swp_B | 8e-68 | 6 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swp_C | 8e-68 | 6 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swp_D | 8e-68 | 6 | 171 | 15 | 173 | NAC domain-containing protein 19 |
4dul_A | 8e-68 | 6 | 171 | 12 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-68 | 6 | 171 | 12 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.004G049500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC184083 | 1e-167 | AC184083.2 Populus trichocarpa clone Pop1-56J5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305109.1 | 0.0 | protein FEZ | ||||
TrEMBL | B9H2P9 | 0.0 | B9H2P9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s04920.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17817 | 4 | 7 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-75 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.004G049500.1 |
Entrez Gene | 7470249 |