PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G049300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 314aa    MW: 35549.7 Da    PI: 7.9853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G049300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.44.3e-34612011128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                         lp+G++F+Ptd+e++ e+L++kv +++      ++++   i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++    
  Potri.004G049300.1  61 LPAGVKFDPTDQEIL-EHLEAKVLSDRrklhplIDEFIPtIEGEnGICYSHPEKLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVHtddd 149
                         799***********9.99****999996665443333333665557**********.566667778******************7444565 PP

                 NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Potri.004G049300.1 150 gsETRWHKTGKTRPVFA-GGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 201
                         55788************.99************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-3954220IPR003441NAC domain
PROSITE profilePS5100534.23461220IPR003441NAC domain
PfamPF023651.9E-1562201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTWCNNNSED ERVIQLVTSN PKEDTFVAAK TEEIRRITCP SCGHNFEIQD QGGIIHDLPG  60
LPAGVKFDPT DQEILEHLEA KVLSDRRKLH PLIDEFIPTI EGENGICYSH PEKLPGVSND  120
GQIRHFFHRP SKAYTTGTRK RRKVHTDDDG SETRWHKTGK TRPVFAGGTV KGFKKILVLY  180
TNYGRQRKPE KTNWVMHQYH LGNNEEEKDG ELVVSKVFYQ TQPRQCSSSI KDSIDNKSTN  240
QSGDHIDNIH PLAKNSTGLL DQFYNRAYIS YDHGNHSSEI PPQFLPNLVV QGDGSSYIRL  300
AAETSKGKLQ RKQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G049300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700140.0KP770014.1 Populus tomentosa NAC transcription factor (Potri.004G049300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384048.20.0NAC domain-containing protein 73
RefseqXP_024454301.10.0NAC domain-containing protein 73
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2I4KKS80.0A0A2I4KKS8_POPTR; NAC family protein
STRINGPOPTR_0004s04900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]