PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G047600.1 | ||||||||
Common Name | POPTR_0004s04720g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22925.8 Da PI: 9.4026 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.7e-20 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdps+ + r++lg+f+taeeAa+a++ a+++++g Potri.004G047600.1 28 HFRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDTAAREFRG 77 69*******.**********965...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.0E-40 | 28 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 28 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-13 | 28 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.21E-33 | 28 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 28 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.96 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MAPREKTAAV KASGGGIVGG GGGGKEVHFR GVRKRPWGRY AAEIRDPSKK SRVWLGTFDT 60 AEEAARAYDT AAREFRGSKA KTNFPYPSCE NVKKNSPSQS STVEFCSSDA PLDLNLGPAV 120 STVRLPFQPM AMNQQQVVYF DAFMKSQYRR MVFDHGYHHH PNQPVIFSCG GVLSDSDSSS 180 VVDLNHQDVK TPRRSVDLDL NLPPPPEIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 25 | 85 | 2 | 63 | ATERF1 |
3gcc_A | 8e-22 | 25 | 85 | 2 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.800 | 0.0 | bud| catkin |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G047600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305121.3 | 1e-129 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor 4 | ||||
Swissprot | Q9LW49 | 3e-44 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2K1YG08 | 2e-92 | A0A2K1YG08_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s04720.1 | 1e-129 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 7e-28 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G047600.1 |
Entrez Gene | 7477386 |