PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G046100.1

Common Name

POPTR_0004s04590g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 326aa MW: 35553 Da PI: 9.2047

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G046100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.4	1.3e-37	28	88	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprC+s ntkfCyynnyslsqPryfCk+C+ryWt GG++rnvPvGgg+rk k+++ Potri.004G046100.1 28 QQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCKRYWTLGGTMRNVPVGGGCRKGKRAK 88 57899***************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	28	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-32	30	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.118	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MQRKMQGGSE DVKPNQERRL KSTQGDDQQQ PQKCPRCESL NTKFCYYNNY SLSQPRYFCK 60 TCKRYWTLGG TMRNVPVGGG CRKGKRAKTS SSSSGENSRL QQQLQQQSQL LQHNLATPQN 120 ILATTNSGNS VSPALRTKES GNLVSPPTPG MSSMGSYFPG DGFLTSLEAI QSLNNNQPPI 180 QSFSFQPLNQ PVNLGGDLGD TSNLGLLHGF SAVPAFGSQN QQQRQFYHVD NRGNKSVEHS 240 FYPHDQESLI QSSRPAATSS HQQQNWHQGF ISNSNPTVSD AVLWSISTST TIGHPNSNIN 300 TGTAGSASLN PDQWHHDLPG NGPPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G046100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002305784.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	B9H2S7	0.0	B9H2S7_POPTR; Uncharacterized protein
STRING	POPTR_0004s04590.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	9e-33	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Potri.004G046100.1
Entrez Gene	7477391