PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G042600.1
Common NamePOPTR_0004s04260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 210aa    MW: 24028.4 Da    PI: 9.5015
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G042600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.21.9e-31331332102
                         HHHHHHHHHC.........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
        HSF_DNA-bind   2 Flkklyeile.........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                         Fl+k+y+++e         +++ k+++sw+++g+ f+v+ + ef++  Lp++Fkh+nf+SF+RQLn+YgFkk+++++         weFkh
  Potri.004G042600.1  33 FLSKTYDLIEeggadgvvdHPHGKRIVSWNADGDGFIVWSPAEFSELTLPRFFKHNNFSSFIRQLNTYGFKKTSSKQ---------WEFKH 114
                         999******9777777777779***************************************************9988.........***** PP

                         SXXXXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                         ++F +g+++ll +i rkk 
  Potri.004G042600.1 115 EKFLRGRRHLLVEITRKKC 133
                         ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3425126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-4029131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.12E-2631131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.8E-2933131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-104265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-108092IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-1093105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAANLLQLDP GTTSKNSSSS NIKSPKTKCP APFLSKTYDL IEEGGADGVV DHPHGKRIVS  60
WNADGDGFIV WSPAEFSELT LPRFFKHNNF SSFIRQLNTY GFKKTSSKQW EFKHEKFLRG  120
RRHLLVEITR KKCEPSTFPA YLEASNRESA TLAMEESNRL ILMEENRNLR REKMELEIQI  180
AQFKALEMKL LDCLTQDMGS HQNKTRRLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-162713115120Heat shock factor protein 1
5d5u_B3e-162713124129Heat shock factor protein 1
5d5v_B3e-162713124129Heat shock factor protein 1
5d5v_D3e-162713124129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G042600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305140.21e-156heat stress transcription factor A-2c
RefseqXP_024455048.11e-156heat stress transcription factor A-2c
TrEMBLB9H2V91e-155B9H2V9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04260.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-37heat shock transcription factor A1D