PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G038800.1 | ||||||||
Common Name | POPTR_0004s03900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 305aa MW: 33910.7 Da PI: 8.5526 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 114.7 | 4e-36 | 44 | 101 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++lkcprC+stntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ Potri.004G038800.1 44 SESLKCPRCESTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPVGGGRKNKRP 101 5789***********************************************9877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-22 | 45 | 100 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-31 | 46 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.475 | 47 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 49 | 85 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGLSSKQVTS NGLDWSQTLL QERTLELPKP PAIRRQQQQN QLQSESLKCP RCESTNTKFC 60 YYNNYNKSQP RHFCKTCKRH WTKGGTLRNV PVGGGRKNKR PKTSKTNADT TTSTNTASTA 120 APRTDNSNNM INRVNPQQPI QAQQQKQNLP DLVLGDQKNL SGILYQAMIN PPSSVLQQNS 180 ISCNNLDTKS FNTNNNGVLL GSSLSLPQIQ GSLFPCPSSF DTHPSLICTS SFQPLNVYNY 240 SGESMEDSTI TTIMPSTSST IAQPWQVPNT SSGMDMTNYW NWDDIENYVS TDLNVTWDDS 300 EIKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G038800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305681.1 | 0.0 | dof zinc finger protein 4 | ||||
TrEMBL | B9H263 | 0.0 | B9H263_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s03900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 3e-28 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G038800.1 |
Entrez Gene | 7494354 |