PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G038000.1
Common NamePOPTR_0004s03820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 352aa    MW: 38772.5 Da    PI: 9.755
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G038000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.7e-53151421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Potri.004G038000.1  15 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 104
                         79****************************.89***************8888999************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++ + ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Potri.004G038000.1 105 ILTSnGAQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                         *99856778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-649177IPR003441NAC domain
PROSITE profilePS5100562.01515177IPR003441NAC domain
PfamPF023655.0E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEGTNSSSRS QHPQLPPGFR FHPTDEELVV HYLKKKAASV PLPVTIIAEI DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG AQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLIENNSSPK PPAADSANKK GGSLRLDDWV LCRIYKKNNS  180
QRPMDQRDKE DSMEGMFASL QNSSHQNPKP LSASKHTAYA SLLVNEDTFF EGILTGDGMQ  240
NGSISQLPSS SSKPNMSMAP VSANTFTATR TLPPHQYWND ATGSPVGLAN SSGKRFHGEL  300
NSGITGTQED NTSFVSMLNQ LPQSTPLVHP STLLDGVLRQ PFQLSSLNWN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-771518020171NAC domain-containing protein 19
3swm_B2e-771518020171NAC domain-containing protein 19
3swm_C2e-771518020171NAC domain-containing protein 19
3swm_D2e-771518020171NAC domain-containing protein 19
3swp_A2e-771518020171NAC domain-containing protein 19
3swp_B2e-771518020171NAC domain-containing protein 19
3swp_C2e-771518020171NAC domain-containing protein 19
3swp_D2e-771518020171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G038000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305677.20.0NAC transcription factor 25
SwissprotQ8GY421e-113NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2K2API50.0A0A2K2API5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-114NAC domain containing protein 25