PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G029100.4
Common NamePOPTR_0004s02870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 418aa    MW: 45729.9 Da    PI: 6.1693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G029100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-053573941254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Potri.004G029100.4 357 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 394
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11355409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-6355399No hitNo description
Gene3DG3DSA:4.10.280.109.7E-9359402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAEEFQAGIC GENWWMNSSK SVFMGGLSPC STVSITSDHM GTYGSWTTAD MVDLKARSIS  60
CKESNHITTS VSDASIPFLN SQKPQQADSD SGGSSILIDS TLQMMGYGLS SSSSSSSDWN  120
QALLPGNGRT ESYNSMMQEE MNSGGLNSSQ IQKDWSPKSY TSTAEDFSLD QQRLNPVNSS  180
GNSPPTCQGF STGFSMEPSA SYGYPSTLIQ SLFEPEYPQP QQAQSLFNNR FMNYLSPTAP  240
NYGTNMTELS SPSWPKVSPL IKPLPKQQPS TLHFTNNTPY WNASPTGIND IRANLLPSSQ  300
SQFLVPAFEE KSNCSNLTTK PSKEVRDSVS VVKKGSEPAF KRPRIETPSP LPTFKVRKEK  360
LGDRITALQQ LVSPFGKTDT ASVLHEAIEY IKFLHDQVSV LSTPYMKNGN PIHHQQV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.94430.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G029100.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472300.0EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455847.10.0transcription factor bHLH112 isoform X1
RefseqXP_024455849.10.0transcription factor bHLH112 isoform X3
TrEMBLA0A2K2AP170.0A0A2K2AP17_POPTR; Uncharacterized protein
TrEMBLA0A2K2AP180.0A0A2K2AP18_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.22e-46bHLH family protein