PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G020400.2 | ||||||||
Common Name | POPTR_0004s01980g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 726aa MW: 79870.5 Da PI: 5.5615 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 58 | 113 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++ +e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Potri.004G020400.2 58 KKRYHRHTQRQIQDMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 113 688999***********************************************998 PP | |||||||
2 | START | 212.9 | 1.2e-66 | 247 | 466 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 e+a +a++el++ a+a+ep+W + e++n++e+l++f+++ + ++ea+r+s+vv+m++++lve+l+d + qW++ + +a Potri.004G020400.2 247 EIAVAAMEELMRIAQAGEPLWIQGEnntEMLNEEEYLRTFTRGIGpkplgMRSEASRESAVVIMNHVNLVEILMDAN-QWSTIFCgivsRA 336 57899*************************************999********************************.******99999** PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +tlev+s+g galq+m+ae+q++sp+vp R+ +fvRy++q+++g+w++vdvS+ds ++ + +++++pSg+li++++ng+sk Potri.004G020400.2 337 MTLEVLSTGvagnynGALQVMTAEFQVPSPIVPtRENYFVRYCKQHTDGTWAVVDVSLDSLRPSL----LSKCRRRPSGCLIQELPNGYSK 423 **************************************************************965....688899**************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v+wveh+++++r++++++r+lv+sgla+gak+wv tl+rqce+ Potri.004G020400.2 424 VVWVEHIEVDDRSVQNIYRPLVNSGLAFGAKRWVGTLDRQCER 466 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 39 | 113 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.55E-18 | 42 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.439 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 56 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.41E-17 | 58 | 116 | No hit | No description |
Pfam | PF00046 | 4.9E-17 | 58 | 113 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 1.51E-33 | 238 | 468 | No hit | No description |
PROSITE profile | PS50848 | 44.721 | 238 | 469 | IPR002913 | START domain |
CDD | cd08875 | 1.20E-123 | 242 | 465 | No hit | No description |
Pfam | PF01852 | 5.3E-56 | 247 | 466 | IPR002913 | START domain |
SMART | SM00234 | 1.0E-66 | 247 | 466 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.7E-4 | 346 | 465 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.4E-25 | 487 | 717 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MFQANMFEGH HMFDMASKSS ENDSSKLKDD DYETKSGTET MEAQSGDDQD PSEQHPKKKR 60 YHRHTQRQIQ DMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKAQHERSE 120 NSILKAENER LRVENNRYKE ALRNASCPNC GGPAALGEMS FDEQHLRIEN VRLREEIDRI 180 SGIAAKYVGK PLSSLSNLSP HLPSRSLDLG VSNFGAQSGF VGEMFGATDL LRSVTGPTEA 240 DKSMIVEIAV AAMEELMRIA QAGEPLWIQG ENNTEMLNEE EYLRTFTRGI GPKPLGMRSE 300 ASRESAVVIM NHVNLVEILM DANQWSTIFC GIVSRAMTLE VLSTGVAGNY NGALQVMTAE 360 FQVPSPIVPT RENYFVRYCK QHTDGTWAVV DVSLDSLRPS LLSKCRRRPS GCLIQELPNG 420 YSKVVWVEHI EVDDRSVQNI YRPLVNSGLA FGAKRWVGTL DRQCERLASS MAINIPSGDL 480 CVITTAEGRK SMLKLAERMV MSFCTGVGAS TAHAWTTLSA TGSDDVRVMT RKSMDDPGRP 540 PGIVLSAATS FWIPVQSKRM FDFLRDENHR SEWDILSNGG EVQEMAHIAN GRDPGNCVSL 600 LRVNSANSSQ SNMLILQESC TDSTGSYVIY APVDISAMNI VLSGGDPDYV ALLPSGFAIL 660 PDGPGYGSAG ILDVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKAAV 720 MCDNA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.774 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G020400.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU278766 | 1e-100 | GU278766.1 Populus balsamifera isolate POR11 haplotype A L1 specific homeobox gene (ML1) / ovulespecific homeobox protein A20 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454819.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_024454820.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | B9H1F8 | 0.0 | B9H1F8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s01980.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G020400.2 |
Entrez Gene | 7458546 |
Publications ? help Back to Top | |||
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