PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.004G010200.1 | ||||||||
Common Name | POPTR_0004s01080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 19596.9 Da PI: 5.4256 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.5 | 4.8e-15 | 23 | 72 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLC.daevaviifsstgklyey 49 k+ie+ks vtf+kRrng++KKA+E + L da a++++s++++ y + Potri.004G010200.1 23 KKIESKSSLIVTFCKRRNGLFKKASEFCNLYdDASLAIVVLSPNQRPYSF 72 68****************************7369**********998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.6E-19 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.535 | 15 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-19 | 16 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-18 | 24 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MQETELVNTT RRWGTGRKKV EMKKIESKSS LIVTFCKRRN GLFKKASEFC NLYDDASLAI 60 VVLSPNQRPY SFGHPDVNTV VDQCLGDQES SERNNISCSE DTHGKNNMDC DNINEEGEGC 120 WWERSVEDMN LEELEKFRAS LETLKNNVAM RVREERRTRV STRDFLGGFS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.004G010200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149575 | 0.0 | AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383903.1 | 1e-124 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | U5GE23 | 1e-122 | U5GE23_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s01080.1 | 1e-123 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 | Representative plant | OGRP10843 | 2 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-27 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Potri.004G010200.1 |
Entrez Gene | 18097368 |