PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G002400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23252.7 Da    PI: 9.3789
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G002400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.7e-191862145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        k+ienks  +vtf+kRr+g++ KA+EL++L++ae+avi fs+  k
  Potri.004G002400.1 18 KKIENKSSLEVTFTKRRKGLFNKASELCILTGAEAAVIAFSPGKK 62
                        68***************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.06E-241081IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.2171070IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-251069IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-151232IPR002100Transcription factor, MADS-box
PfamPF003191.7E-201966IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATKVKKQSL GRQKIEIKKI ENKSSLEVTF TKRRKGLFNK ASELCILTGA EAAVIAFSPG  60
KKAFAFGFPS VDTVIDRYIS ENTEEGRSVN TSASHHRVVQ ESRKQYAEAL AKKEEEKKRV  120
ETMKEGGTVG FGRDRFWWDL SIEDMGLEEL ERYVASMEEL KKNLELGLMS WRRQATLHPD  180
SWIWIPASTQ RVLIDIYESI CMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G002400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454389.11e-149agamous-like MADS-box protein AGL62
TrEMBLA0A2K2AMY21e-148A0A2K2AMY2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s00400.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29AGAMOUS-like 62