PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G219900.1 | ||||||||
Common Name | POPTR_0003s21120g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 35791.9 Da PI: 8.3255 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl Potri.003G219900.1 35 RGPWTPEEDELLANYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 82 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.5e-16 | 88 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Potri.003G219900.1 88 RGQISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 133 67889*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.779 | 30 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 32 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-14 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-11 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 25.239 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-15 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 88 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-25 | 90 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.80E-12 | 92 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MRKPTSSTAT AEAAAAGGGP AAKSTPCCIK VGLKRGPWTP EEDELLANYI KKEGEGRWRT 60 LPKKAGLLRC GKSCRLRWMN YLRPSVKRGQ ISPDEEDLIL RLHRLLGNRW SLIAGRIPGR 120 TDNEIKNYWN THLSKKLISQ GIDPRTHKPL INPQSFDQSK PSSSKANHLQ ESLKEPIKIA 180 SSGLEETTSG SAHIISNKEN GYFQNNSNAH LGDQYHTDHF IASRGYTSLL NYDGSFGTDL 240 RGNQRLGNGE AEDINSGTED VFSFLNSLIN EEAFQQHQIF NEPNVNSAPA STDPLFPIAA 300 ATSFGLSTGW ESTLMPSALD QNDSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 33 | 137 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G219900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF811025 | 0.0 | KF811025.1 Populus tomentosa putative R2R3 MYB transcription factor MYB006 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303999.2 | 0.0 | transcription repressor MYB5 | ||||
Swissprot | Q38850 | 3e-81 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | B9GY74 | 0.0 | B9GY74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s21120.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3894 | 30 | 64 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-80 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G219900.1 |
Entrez Gene | 7463575 |
Publications ? help Back to Top | |||
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