PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G219900.1
Common NamePOPTR_0003s21120g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 326aa    MW: 35791.9 Da    PI: 8.3255
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G219900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-183582148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Potri.003G219900.1 35 RGPWTPEEDELLANYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 82
                        89******************************99************97 PP

2Myb_DNA-binding50.16.5e-1688133148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg  +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Potri.003G219900.1  88 RGQISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 133
                         67889*****************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7793082IPR017930Myb domain
SuperFamilySSF466891.5E-2932129IPR009057Homeodomain-like
SMARTSM007179.3E-143484IPR001005SANT/Myb domain
PfamPF002495.6E-163582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-223689IPR009057Homeodomain-like
CDDcd001671.94E-113782No hitNo description
PROSITE profilePS5129425.23983137IPR017930Myb domain
SMARTSM007178.6E-1587135IPR001005SANT/Myb domain
PfamPF002499.2E-1588133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2590138IPR009057Homeodomain-like
CDDcd001676.80E-1292133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRKPTSSTAT AEAAAAGGGP AAKSTPCCIK VGLKRGPWTP EEDELLANYI KKEGEGRWRT  60
LPKKAGLLRC GKSCRLRWMN YLRPSVKRGQ ISPDEEDLIL RLHRLLGNRW SLIAGRIPGR  120
TDNEIKNYWN THLSKKLISQ GIDPRTHKPL INPQSFDQSK PSSSKANHLQ ESLKEPIKIA  180
SSGLEETTSG SAHIISNKEN GYFQNNSNAH LGDQYHTDHF IASRGYTSLL NYDGSFGTDL  240
RGNQRLGNGE AEDINSGTED VFSFLNSLIN EEAFQQHQIF NEPNVNSAPA STDPLFPIAA  300
ATSFGLSTGW ESTLMPSALD QNDSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25331375108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G219900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8110250.0KF811025.1 Populus tomentosa putative R2R3 MYB transcription factor MYB006 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303999.20.0transcription repressor MYB5
SwissprotQ388503e-81MYB5_ARATH; Transcription repressor MYB5
TrEMBLB9GY740.0B9GY74_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-80myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]