PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G214000.1
Common NamePOPTR_0003s21710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 436aa    MW: 48210 Da    PI: 9.6975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G214000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012293315123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y Cp C+k + ++ ++  H+ tH
  Potri.003G214000.1 293 YICPRCKKICETSQTFAAHMLTH 315
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-5281316No hitNo description
PROSITE patternPS000280295315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MANNNFNVSS SSIVHENSLV LSLNSNLAQD HVNGHGRIIP QSLAPTIGTV QPNNLFVPQR  60
AGLGQIALGQ RLSEVRRTHV SSLSVRIHTI IEYLPTEQNQ IEALPLHPTS DYTVTEIPRT  120
TYTQFLPPAS PRELLFTPNH NNIHLQSLNP NDGFRIQGQP NFQNHNLTMS NQVNQHNAYR  180
PYSPPNRQMI NFMNLDHLNH SHGNNDGVVL NPEPLSVYAP PGISRAQNPN LNLGQNHNLE  240
TSQLDIDQVR INPRDEARDI PNNQSSTSSE DEEEMGLNDG VTHSLPHQKY GPYICPRCKK  300
ICETSQTFAA HMLTHYRVEN KEQRKRRLAA KNKKKNLHQI HSRGNGLTIS PAGTENLQEV  360
HSRGIGLTIS PVGTKGKVPS KVYVRRKKAA GGKAEMATSK RVVEDKVQKE GQGNTVLDEA  420
SSSSPVGVVN KGLTM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329335AKNKKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G214000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025400.10.0PREDICTED: uncharacterized protein LOC105126279
TrEMBLB9GYK70.0B9GYK7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1894066
Representative plantOGRP1013833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.12e-15C2H2 family protein