PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G213200.1
Common NamePOPTR_0003s21780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 316aa    MW: 33722.9 Da    PI: 9.7688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G213200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07103128227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         k +lC+ +     Ck+Gd+C+FaHg+
  Potri.003G213200.1 103 KSRLCNKYNTVEGCKFGDKCHFAHGE 128
                         6789999999999***********96 PP
2zf-CCCH34.73.1e-11282306126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C +f + G C +GdrC+FaHg
  Potri.003G213200.1 282 FKTKICENFNK-GSCTFGDRCHFAHG 306
                         69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423866IPR000571Zinc finger, CCCH-type
SMARTSM003561.73865IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-63964IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-74063IPR000571Zinc finger, CCCH-type
PfamPF146081.94663No hitNo description
Gene3DG3DSA:4.10.1000.105.5E-1399131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-7100131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281101129IPR000571Zinc finger, CCCH-type
SMARTSM003560.0056101128IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-5103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.92E-14180260IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.6E-15188260IPR004088K Homology domain, type 1
SMARTSM003226.1E-12188258IPR004087K Homology domain
PROSITE profilePS5008414.236189253IPR004088K Homology domain, type 1
CDDcd001051.28E-13191253No hitNo description
PfamPF000138.7E-11191254IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.3E-16279312IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7281307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8281311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868281308IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9282306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEFGGGHRKR GRLDAAFNGN GGHKKTRQEM ESFSTGIGSK SKPCTKFFST SGCPFGEGCH  60
FLHYVPGGYK AVSQMLPALP PASRNQGAPP PSFPDRSSPP SVKSRLCNKY NTVEGCKFGD  120
KCHFAHGEWE LGKASAASYD DPRAMGPMQG RAAAPYDDPR AMGPMQGRMS RHMEHPHQGH  180
GAAASFGSSA TTKISIDASL AGAIIGKNGV NSKHICRATG AKLSIREHET DPKKRNIELE  240
GSFDQISQAS DMVRQLISNV GQASGPPMKN SSMHSSGGSN NFKTKICENF NKGSCTFGDR  300
CHFAHGAEEL RKSGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G213200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2396551e-167FJ239655.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396561e-167FJ239656.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396571e-167FJ239657.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396581e-167FJ239658.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396591e-167FJ239659.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396601e-167FJ239660.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396611e-167FJ239661.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396621e-167FJ239662.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396631e-167FJ239663.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396641e-167FJ239664.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396651e-167FJ239665.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396661e-167FJ239666.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396671e-167FJ239667.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396681e-167FJ239668.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396691e-167FJ239669.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396701e-167FJ239670.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396711e-167FJ239671.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396721e-167FJ239672.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396731e-167FJ239673.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
GenBankFJ2396741e-167FJ239674.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304891.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB9GYL20.0B9GYL2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21780.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-50C3H family protein