PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G205000.1
Common NamePOPTR_0003s20400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 337aa    MW: 37858.2 Da    PI: 7.9166
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G205000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05173192120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Potri.003G205000.1 173 FSCPLCFKTFNRYNNMQMHM 192
                         89*****************9 PP
2zf-C2H214.69.4e-05257279123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk F  + + ++H +++
  Potri.003G205000.1 257 FMCRKCGKAFAVRGDWRTHEKNC 279
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66173200IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-5173192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-6239277No hitNo description
Gene3DG3DSA:3.30.160.608.9E-6253277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549257277IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808257277IPR007087Zinc finger, C2H2
SMARTSM00355180283306IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MADPYSNYFN GWYNFKLHHN LSASASSSNP SLYASYGCNT YSDNNTIHNS SFIQFCQSSS  60
PPSPPLREAL PLLSLSPTRH EHQQESSCSA MEVDKNKERE ESLCDGETVT VALHLGLPSP  120
CSADLVSRLS SSEISSDKED VTAASGYQTS STLNKGQYWI PTPSQILIGP TQFSCPLCFK  180
TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAPGCRNNI DHPRAKPLKD  240
FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH  300
IKSFGHGHSA NGIDFFEEDD EPASEIEQDN DSTQRN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G205000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304767.20.0zinc finger protein WIP2
SwissprotQ9SVY11e-139ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLB9GWA10.0B9GWA1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s20400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-132C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]