PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.003G194600.8 | ||||||||
Common Name | POPTR_0003s19410g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 443aa MW: 49005.6 Da PI: 5.5414 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.9 | 1.2e-09 | 201 | 242 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Potri.003G194600.8 201 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEQEL 242 5888*************************9877777666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-7 | 192 | 245 | No hit | No description |
SMART | SM00338 | 2.0E-8 | 198 | 261 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.427 | 200 | 244 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-7 | 202 | 245 | No hit | No description |
CDD | cd14708 | 2.15E-22 | 202 | 254 | No hit | No description |
Pfam | PF00170 | 1.0E-6 | 202 | 242 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 205 | 220 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.5E-32 | 284 | 359 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 443 aa Download sequence Send to blast |
MGSRTDAEDE KKAVGMPSFD PQLPISNAIV ERSTVHPYRV TDFGVFLEDD AIDLSAGTVF 60 NSAKESTQAI PSDRLHSGTF EKKQSTTSFN IKSSASQVES HRLPLEKVQQ SNQVSIPIVD 120 TENWGENRRL PLEKVQQSNR VSIPSVNTEN WGEANMADAS PRTDISTDAD TDDKNQRYDR 180 GQSTALVASD SSDRTRDKMD QKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLSQLEQ 240 ELQRARQQGI FISSSGDQTH SMSGNGAMAF DVEYARWLEE QNRQINELRS AVNSHAGDAE 300 LRIITDGIMA HYDEVFKLKS NAAKADVFHL LSGMWKTPAE RCFLWLGGFR SSELLKLLMN 360 QLEPLTEQQL VGIGNLQQSS QQAEDALSQG MEALQQSLSE TLSSGSLGSS GPSGNVANYM 420 GQMAMAMGKL GTLEGFIRQV CF* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.3615 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.003G194600.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303938.3 | 0.0 | transcription factor TGA2 | ||||
Refseq | XP_024453579.1 | 0.0 | transcription factor TGA2 | ||||
Refseq | XP_024453580.1 | 0.0 | transcription factor TGA2 | ||||
Refseq | XP_024453581.1 | 0.0 | transcription factor TGA2 | ||||
Refseq | XP_024453582.1 | 0.0 | transcription factor TGA2 | ||||
Refseq | XP_024453583.1 | 0.0 | transcription factor TGA2 | ||||
Swissprot | Q41558 | 1e-172 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A2K2B9M3 | 0.0 | A0A2K2B9M3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s19410.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-143 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.003G194600.8 |
Entrez Gene | 7460251 |