PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G194600.3
Common NamePOPTR_0003s19410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 488aa    MW: 54313.7 Da    PI: 6.8132
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G194600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.71.4e-09201242445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Potri.003G194600.3 201 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEQEL 242
                         5888*************************9877777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-8198261IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.427200244IPR004827Basic-leucine zipper domain
CDDcd147083.71E-21202254No hitNo description
PfamPF001701.2E-6202242IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-7202245No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-7203246No hitNo description
PROSITE patternPS000360205220IPR004827Basic-leucine zipper domain
PfamPF141442.9E-32284359IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGSRTDAEDE KKAVGMPSFD PQLPISNAIV ERSTVHPYRV TDFGVFLEDD AIDLSAGTVF  60
NSAKESTQAI PSDRLHSGTF EKKQSTTSFN IKSSASQVES HRLPLEKVQQ SNQVSIPIVD  120
TENWGENRRL PLEKVQQSNR VSIPSVNTEN WGEANMADAS PRTDISTDAD TDDKNQRYDR  180
GQSTALVASD SSDRTRDKMD QKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLSQLEQ  240
ELQRARQQGI FISSSGDQTH SMSGNGAMAF DVEYARWLEE QNRQINELRS AVNSHAGDAE  300
LRIITDGIMA HYDEVFKLKS NAAKADVFHL LSGMWKTPAE RCFLWLGGFR SSELLKLLMN  360
QLEPLTEQQL VGIGNLQQSS QQAEDALSQG MEALQQSLSE TLSSGSLGSS GPSGNVANYM  420
GQMAMAMGKL GTLEGFIRQA DNLRQQTLQQ MHRILTTRQS ARALLAIHDY FSRLRALSSL  480
WLARPKE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.36150.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G194600.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303938.30.0transcription factor TGA2
RefseqXP_024453579.10.0transcription factor TGA2
RefseqXP_024453580.10.0transcription factor TGA2
RefseqXP_024453581.10.0transcription factor TGA2
RefseqXP_024453582.10.0transcription factor TGA2
RefseqXP_024453583.10.0transcription factor TGA2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2K2B9N10.0A0A2K2B9N1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19410.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-163TGACG motif-binding factor 6