PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G192100.3 | ||||||||
Common Name | POPTR_0003s19130g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YC | ||||||||
Protein Properties | Length: 286aa MW: 31182 Da PI: 4.7459 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 35.9 | 1.6e-11 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r+ + + +t+ ++ +v++ ++fdfl +iv r Potri.003G192100.3 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTHEITLQRGAKTMSALHLKHCVQSYNVFDFLREIVSR 69 899**************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 2.3E-11 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 5.07E-19 | 1 | 70 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.8E-17 | 1 | 69 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTHEITLQR GAKTMSALHL KHCVQSYNVF 60 DFLREIVSRV PDYSHGHSDS TGDHRPLQKR KPTGDECNDS DEELKRSRMH EMSHAGSSGR 120 GRGRGRGRGR GRGARNIERE SSSRDLEPES CTTVQQSIKN NTNPGVVMDN GSESKESVKE 180 NNRVSDATNQ PERNFDLNAE VNDSEDAKAA AAPAAAAPAA AATTTTTTTT TSAPSSSVEP 240 AAETNHEEYP GWSLSEMDKM VIDPLQLAQL SKRLDEEEED YDEEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-14 | 1 | 55 | 21 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 131 | RGRGRGRGRGR |
2 | 123 | 132 | RGRGRGRGRG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.837 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G192100.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002304814.1 | 0.0 | dr1-associated corepressor homolog isoform X2 | ||||
TrEMBL | B9GXA0 | 0.0 | B9GXA0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s19130.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 8e-61 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G192100.3 |
Entrez Gene | 7460270 |