PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G192100.2

Common Name

POPTR_0003s19130g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 303aa MW: 33208.6 Da PI: 5.3122

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G192100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.9	4.6e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r+ + + +t+ ++ +v++ ++fdfl +iv r Potri.003G192100.2 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTHEITLQRGAKTMSALHLKHCVQSYNVFDFLREIVSR 86 5789*************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.9E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.19E-20	3	94	IPR009072	Histone-fold
Pfam	PF00808	2.0E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT HEITLQRGAK 60 TMSALHLKHC VQSYNVFDFL REIVSRVPDY SHGHSDSTGD HRPLQKRKPT GDECNDSDEE 120 LKRSRMHEMS HAGSSGRGRG RGRGRGRGRG ARNIERESSS RDLEPESCTT VQQSIKNNTN 180 PGVVMDNGSE SKESVKENNR VSDATNQPER NFDLNAEVND SEDAKAAAAP AAAAPAAAAT 240 TTTTTTTTSA PSSSVEPAAE TNHEEYPGWS LSEMDKMVID PLQLAQLSKR LDEEEEDYDE 300 EG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	148	RGRGRGRGRGR
2	140	149	RGRGRGRGRG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.837	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G192100.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304814.1	0.0	dr1-associated corepressor homolog isoform X2
TrEMBL	B9GXA0	0.0	B9GXA0_POPTR; Uncharacterized protein
STRING	POPTR_0003s19130.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-73	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Potri.003G192100.2
Entrez Gene	7460270