PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G192100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YC | ||||||||
Protein Properties | Length: 317aa MW: 34854.5 Da PI: 5.6774 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 43.9 | 5.2e-14 | 6 | 99 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlha...............eenkrrtlkksdiaaavtrtdifdflvdi 95 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r+ + ee+kr t + + +v++ ++fdfl +i Potri.003G192100.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTHEITlqrgaktmsalhlmgEESKR-TTSRILRKHCVQSYNVFDFLREI 97 5789**********************************9986665443300000001111111133333.33444455667777777777777 PP NF-YC 96 vp 97 v Potri.003G192100.1 98 VS 99 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-23 | 2 | 67 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.38E-15 | 3 | 103 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-16 | 8 | 67 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MKKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT HEITLQRGAK 60 TMSALHLMGE ESKRTTSRIL RKHCVQSYNV FDFLREIVSR VPDYSHGHSD STGDHRPLQK 120 RKPTGDECND SDEELKRSRM HEMSHAGSSG RGRGRGRGRG RGRGARNIER ESSSRDLEPE 180 SCTTVQQSIK NNTNPGVVMD NGSESKESVK ENNRVSDATN QPERNFDLNA EVNDSEDAKA 240 AAAPAAAAPA AAATTTTTTT TTSAPSSSVE PAAETNHEEY PGWSLSEMDK MVIDPLQLAQ 300 LSKRLDEEEE DYDEEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 3e-20 | 2 | 67 | 5 | 70 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 162 | RGRGRGRGRGR |
2 | 154 | 163 | RGRGRGRGRG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.837 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G192100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002304814.1 | 1e-171 | dr1-associated corepressor homolog isoform X2 | ||||
TrEMBL | B9GXA0 | 1e-170 | B9GXA0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s19130.1 | 1e-171 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1728 | 34 | 91 | Representative plant | OGRP2179 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 8e-70 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G192100.1 |