PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G191900.1
Common NamePOPTR_0003s19110g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 152aa    MW: 17622 Da    PI: 9.0808
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G191900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.1e-1133146299
                         EEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTH.HHHHHHHT-- CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkl.iyrkksgryvltkGW.keFvkangLk 75 
                         +k+++psd ++++rl ++ + +e+h                ++++++ ++ ++d + +s+   + + + +s++y++ +GW k+Fvk  +L 
  Potri.003G191900.1  33 KKKMKPSDLGNLCRLLVSADLVEKHilpflnedqtkqviiPNQERNGLKVWVRDIDTESMHQLVfKRWSTSKSYIFNDGWtKHFVKRRNLV 123
                         699*************************988777777777556667778888887776665444144*************557******** PP

                         TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  76 egDfvvFkldgr.sefelvvkvfrk 99 
                         egD + ++ d++ s+f  +++v+++
  Potri.003G191900.1 124 EGDEIGLYWDNDqSRF--HFSVLSR 146
                         ********88765666..8888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-1628144IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-1630145No hitNo description
SMARTSM010195.6E-532147IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1832146IPR015300DNA-binding pseudobarrel domain
PfamPF023628.2E-834145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MRSSFSLGDL LEERSRGVST QLSLYHHDPF EIKKKMKPSD LGNLCRLLVS ADLVEKHILP  60
FLNEDQTKQV IIPNQERNGL KVWVRDIDTE SMHQLVFKRW STSKSYIFND GWTKHFVKRR  120
NLVEGDEIGL YWDNDQSRFH FSVLSRAAAT G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G191900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452178.11e-108putative B3 domain-containing protein At1g78640
TrEMBLA0A3N7EUQ21e-107A0A3N7EUQ2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19110.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Representative plantOGRP782034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.15e-32B3 family protein