PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G180600.1

Common Name

POPTR_0003s17900g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 286aa MW: 31841.4 Da PI: 7.1824

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G180600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Potri.003G180600.1 112 FSCNYCQRKFYSSQALGGHQNAH 134 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.33E-6	108	139	No hit	No description
PROSITE profile	PS50157	11.427	112	139	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEPPARSEAC LSETSSLISV SNAPSCLRPS LIMESQKEGR KQLEEDQEAE EQEPREGGDT 60 NHDLVLDLSL SNKDSNQESS KPELNLIDSF DMNPSSKSLD APQSNETEPR VFSCNYCQRK 120 FYSSQALGGH QNAHKRERTL AKRGQRISEA SFSLLRPNYS HQNRYTSLAS LPLHGSFNRS 180 LGIQVHSMIN KPSNTSSSNI YGQNGWSRKP IDRQPEIGRL ESEKFLMGKN ISGSSSINGV 240 ARFESARRFS PVITEGIGGF WWEVGVNHLK AKQDDLQKLD LSLKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.6657	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G180600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304721.2	0.0	zinc finger protein 1
TrEMBL	B9GVJ1	0.0	B9GVJ1_POPTR; Uncharacterized protein
STRING	POPTR_0003s17900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-42	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Potri.003G180600.1
Entrez Gene	7493218