PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G172600.1
Common NamePOPTR_0003s17120g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 412aa    MW: 45630.6 Da    PI: 9.5627
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G172600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.6e-41186261176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk+
  Potri.003G172600.1 186 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCPKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQ 261
                         6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.7E-33179248IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.71184261IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-38185265IPR004333Transcription factor, SBP-box
PfamPF031101.0E-30187260IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSSVSLMEWN GKPHLQWDWE NLIMFNAITN ENSKQLSLTD LETDGEKGND SGFFYSSGSV  60
SRSRGSISDL ELASFSKSSK SASTNSSSAG EVKTSKFTLG ASKTNPSDYN KEELVKAKAT  120
DTSPTLEASV GSGDQLLGLK LGKRTYFEDA CAGSNAQSSS ISTIPVPSFT PAKKLKSSNH  180
SQRAPRCQVE GCNLDLSSAK DYHRKHRVCE SHSKCPKVIV AGLERRFCQQ CSRFHGLSEF  240
DEKKKSCRRR LSDHNARRRK QPGSVHLNPS RLSSSLYGID ERQQMSHVWD KAPLVHSRPN  300
ANLTWESTST SKFTITKEYI AKPAEIGGSD RRLHLPGIDL TNSIAIQHHH KSNGFLPSKA  360
KGTAEYWRTE QQSNDPQVHT LSSRTDGSNY LQEFQLLRTS NGNDFYSSHM N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-271872601184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242259KKKSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.27601e-170stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G172600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453857.10.0squamosa promoter-binding-like protein 2 isoform X1
RefseqXP_024453858.10.0squamosa promoter-binding-like protein 2 isoform X1
SwissprotQ9S8402e-76SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A3N7EUC70.0A0A3N7EUC7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s17120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-74squamosa promoter binding protein-like 2