PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G170200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22715.4 Da PI: 10.2494 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.6 | 3.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienks rqvtfskRrng++KKA ELSvLCd++va+++fss +klye+ss Potri.003G170200.1 9 KRIENKSSRQVTFSKRRNGLFKKARELSVLCDVQVAILVFSSCDKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 51.2 | 5.6e-18 | 76 | 171 | 3 | 98 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 k++++s+++++ae ++ ++a+Lk+ + L R+l G +L+l +L +Le+qL+ l+++R++K +++le+++ l +ek+l+een+ Potri.003G170200.1 76 KKTTSSKDANHAEVYYGKHANLKSLAKLLLMVERNLEGPYAMELTLGDLVELEKQLHVTLTHVRDRKIQMMLESVKSLHDQEKMLKEENQL 166 45566688999999***************************************************************************** PP K-box 94 Lrkkl 98 L+k++ Potri.003G170200.1 167 LEKQI 171 **998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.796 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.42E-36 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 6.8E-31 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.0E-12 | 83 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.781 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRKKVELKR IENKSSRQVT FSKRRNGLFK KARELSVLCD VQVAILVFSS CDKLYEFSSV 60 GSTTNILKRY TSHFKKKTTS SKDANHAEVY YGKHANLKSL AKLLLMVERN LEGPYAMELT 120 LGDLVELEKQ LHVTLTHVRD RKIQMMLESV KSLHDQEKML KEENQLLEKQ IVAMKNGKDS 180 DHPLYHPPQQ TTLSLLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 3e-18 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 3e-18 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 3e-18 | 1 | 73 | 1 | 72 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G170200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452886.1 | 1e-143 | MADS-box protein FLOWERING LOCUS C | ||||
TrEMBL | A0A2K2B8F2 | 1e-142 | A0A2K2B8F2_POPTR; Uncharacterized protein | ||||
STRING | EOX99786 | 9e-57 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14472 | 4 | 12 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 4e-41 | AGAMOUS-like 31 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G170200.1 |