PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G170000.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19770.7 Da PI: 10.2942 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80 | 1.6e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie k+ rq+tfskRrng++KKA LS LCd++va+++fss+gklye+ss Potri.003G170000.3 9 KRIEKKICRQITFSKRRNGLIKKARDLSLLCDVQVALLVFSSSGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 48 | 5.6e-17 | 96 | 171 | 22 | 97 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +k+k+ e Lq+ qR++ + e+L+l +L+q e q++ +l++ R++K+el+le i+ l kek l+een++L+++ Potri.003G170000.3 96 KKIKSFAELLQTVQRQVGDSNFEELTLSDLEQTEMQVDAALRRTRARKTELMLETINALNDKEKTLREENQRLQTQ 171 689**************999*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.59 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.2E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.34E-32 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-28 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.177 | 88 | 171 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.4E-13 | 96 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MGRKKVELKR IEKKICRQIT FSKRRNGLIK KARDLSLLCD VQVALLVFSS SGKLYEFSSA 60 GSLAKILKRH RSYFEEKTAL SNGANDAELY HGKYEKKIKS FAELLQTVQR QVGDSNFEEL 120 TLSDLEQTEM QVDAALRRTR ARKTELMLET INALNDKEKT LREENQRLQT Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-18 | 1 | 82 | 1 | 81 | MEF2 CHIMERA |
6byy_B | 5e-18 | 1 | 82 | 1 | 81 | MEF2 CHIMERA |
6byy_C | 5e-18 | 1 | 82 | 1 | 81 | MEF2 CHIMERA |
6byy_D | 5e-18 | 1 | 82 | 1 | 81 | MEF2 CHIMERA |
6bz1_A | 6e-18 | 1 | 82 | 1 | 81 | MEF2 CHIMERA |
6bz1_B | 6e-18 | 1 | 82 | 1 | 81 | MEF2 CHIMERA |
6bz1_C | 6e-18 | 1 | 82 | 1 | 81 | MEF2 CHIMERA |
6bz1_D | 6e-18 | 1 | 82 | 1 | 81 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G170000.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452186.1 | 1e-120 | MADS-box transcription factor 14 isoform X2 | ||||
TrEMBL | A0A2K2B8F0 | 1e-117 | A0A2K2B8F0_POPTR; Uncharacterized protein | ||||
STRING | EOX99786 | 1e-53 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 2e-43 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G170000.3 |