PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G169400.1
Common NamePOPTR_0003s16780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 314aa    MW: 34232.9 Da    PI: 9.3341
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G169400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.84.1e-4024100278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dl+++++yhrrhkvCe hsk+ +v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  Potri.003G169400.1  24 CLVDGCTSDLTKCRDYHRRHKVCELHSKSRQVFIKGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKSQP 100
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-321885IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.5222198IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3722103IPR004333Transcription factor, SBP-box
PfamPF031102.3E-292497IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MESASSGSLK RARTLKNATR VPSCLVDGCT SDLTKCRDYH RRHKVCELHS KSRQVFIKGQ  60
EQRFCQQCSR FHSLGEFDEG KRSCRKRLDG HNRRRRKSQP ESLSVNSGRI FSNQGTRYLH  120
FGSSQIFSTS VMNAVWTGAA KAESDPMLNT SQSSMNFGGR KNLFPGSLSS NYKEGKQFSF  180
LQGTSSTIPG DSVHLDANST LGNSGNSQKM FSDGLNRVID SNRALSLLSS PPSETREIGL  240
SDMMQPDLNS PAQSLIPSLN YNALGMESEP AGSVLVSDGS SGNANLNGQH MFQIEPDGSS  300
ANGSHQTLSF SWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-3024971184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G169400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020783.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_011020784.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_011020785.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_011020786.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_011020787.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLA0A385JHW40.0A0A385JHW4_POPTO; Squamosa promoter-binding protein-like
TrEMBLB9GZN10.0B9GZN1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-49SBP family protein