PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G167900.1

Common Name

POPTR_0003s16630g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 303aa MW: 32590.2 Da PI: 6.6886

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G167900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.4	1.5e-35	58	141	2	84
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eL +++d++ti+WLlqqa+p+i+++tgt++++as+ a++s+s+++ Potri.003G167900.1 58 APKRSSNKDRHKKVEGRGRRIRIPALCAARIFQLTRELEHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGASVSEQGG 141 789******************************************************************988644444444442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-29	63	153	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.569	64	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEPKSPNQYQ PQMPSFLNPP QEASMSENNI NSNNNKPADN EDFQNMMADK DDSKKKLAPK 60 RSSNKDRHKK VEGRGRRIRI PALCAARIFQ LTRELEHKSD GETIQWLLQQ AEPSIIAATG 120 TGTIPASALA AAGASVSEQG GSVSTGLHAK MEGLGPGVTG SRDRNDWTLS NTKLGISNVA 180 TGVWPSVGGI GLGFVPNSGQ STSNFGNENS STLPKYGFQG VEFPNINMGL MSFYSMFSGT 240 NQQLPGLELG LSQDGHSAML NPQALSPFYH QMVQGRGVLD SLNQEKQQEQ PPDKDDSQGS 300 RQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.14496	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G167900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304668.2	0.0	transcription factor TCP20
Swissprot	Q9LSD5	4e-67	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2K2B8C4	0.0	A0A2K2B8C4_POPTR; Uncharacterized protein
STRING	POPTR_0003s16630.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	3e-67	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.003G167900.1
Entrez Gene	7496557

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]