PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G166000.3
Common NamePOPTR_0003s16440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 424aa    MW: 47025.6 Da    PI: 8.1449
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G166000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-061243435
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                          C+ ++e+ + l+C+ ++  lC  C ++ H+
  Potri.003G166000.3 12 VPCDFCSEQTAVLYCRADSAKLCLFCDQHVHS 43
                        57**************************9995 PP
2zf-B_box20.41.1e-065495338
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        +++C++++++ ++  C +++  lC++C    H +      H+
  Potri.003G166000.3 54 AQICDNCNSELVSVRCATDNLVLCQECDWDAHGScsvsasHD 95
                        689************************998884466666665 PP
3CCT44.36.2e-163904181644
                 CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         +++K+irYesRKa+A+sR+RvKGrFvk +
  Potri.003G166000.3 390 RYDKHIRYESRKARADSRKRVKGRFVKTT 418
                         79************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-12956IPR000315B-box-type zinc finger
PROSITE profilePS5011910.011956IPR000315B-box-type zinc finger
CDDcd000213.77E-71256No hitNo description
PROSITE profilePS501199.5565299IPR000315B-box-type zinc finger
CDDcd000211.69E-55685No hitNo description
SMARTSM003363.35799IPR000315B-box-type zinc finger
PROSITE profilePS510179.484375417IPR010402CCT domain
PfamPF062037.7E-11391417IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVTHNSKTKE TVPCDFCSEQ TAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRAQICDNC  60
NSELVSVRCA TDNLVLCQEC DWDAHGSCSV SASHDRTIIE GFSGCPTALD LASIWGFDLE  120
EKKQEPFQDL MVPNENSNNG NRNVDNVMVF GNVSKSPSCG KYKHVIYKQL VELLKRDLMG  180
GGGGGGEGGG GGEQLLHEQM PFTSLLMLPT EVGVKISRVS NNNRKFLPFQ IWDFHLGQLR  240
SHDESGQLEI EYGANDAGFV IKNFSEPMKE TSLTNTKMLG NIQGPATSES NNLPIARVLS  300
GTAFCKPKCS GSSKDVQFME QSILVRGEGF KTEAATKVDM ELLVRNRGDA MQRYKEKKKT  360
RRYAYLLLLV ISTACLSSNA LCTVKFCINR YDKHIRYESR KARADSRKRV KGRFVKTTEA  420
PDC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G166000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452317.10.0zinc finger protein CONSTANS-LIKE 15 isoform X2
TrEMBLU3Q0450.0U3Q045_POPTO; COL
STRINGPOPTR_0003s16440.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-105B-box type zinc finger protein with CCT domain