PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G166000.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 382aa    MW: 40955.2 Da    PI: 4.5006
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G166000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.5e-061243435
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                          C+ ++e+ + l+C+ ++  lC  C ++ H+
  Potri.003G166000.2 12 VPCDFCSEQTAVLYCRADSAKLCLFCDQHVHS 43
                        57**************************9995 PP
2zf-B_box20.69.3e-075495338
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        +++C++++++ ++  C +++  lC++C    H +      H+
  Potri.003G166000.2 54 AQICDNCNSELVSVRCATDNLVLCQECDWDAHGScsvsasHD 95
                        689************************998884466666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.011956IPR000315B-box-type zinc finger
SMARTSM003361.2E-12956IPR000315B-box-type zinc finger
CDDcd000211.92E-71256No hitNo description
PROSITE profilePS501199.5565299IPR000315B-box-type zinc finger
CDDcd000219.80E-65685No hitNo description
SMARTSM003363.35799IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVTHNSKTKE TVPCDFCSEQ TAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRAQICDNC  60
NSELVSVRCA TDNLVLCQEC DWDAHGSCSV SASHDRTIIE GFSGCPTALD LASIWGFDLE  120
EKKQEPFQDL MVPNENSNNG NRNVDNVMVF GNVSKSPSCG KYKHVIYKQL VELLKRDLMG  180
GGGGGGEGGG GGDDEGGDFG DGEGCDFGGG DGREGENLVP ETQSRSAWRE GVGFGNGNGN  240
GNGGRFGNDN VGGGGSDGNV RGEQLLHEQM PFTSLLMLPT EVGVKSNGKL IGEDIMWDSN  300
ANAHGTQIWD FHLGQLRSHD ESGQLEIEYG ANDAGFVIKN FSEPMKETSL TNTKMLGNMY  360
QMNCSIVHDD MASFNPGTSN I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G166000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2977056e-45KC297705.1 Populus tomentosa COL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452317.10.0zinc finger protein CONSTANS-LIKE 15 isoform X2
TrEMBLU3Q0450.0U3Q045_POPTO; COL
STRINGcassava4.1_006085m1e-143(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-63B-box type zinc finger protein with CCT domain