PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G166000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 499aa    MW: 54297.4 Da    PI: 5.784
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G166000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52.1e-061243435
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                          C+ ++e+ + l+C+ ++  lC  C ++ H+
  Potri.003G166000.1 12 VPCDFCSEQTAVLYCRADSAKLCLFCDQHVHS 43
                        57***************************995 PP
2zf-B_box20.11.4e-065494337
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        +++C++++++ ++  C +++  lC++C    H +      H
  Potri.003G166000.1 54 AQICDNCNSELVSVRCATDNLVLCQECDWDAHGScsvsasH 94
                        689************************99888436666666 PP
3CCT64.43.4e-22450493144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  a++RYkeK+ktR+++K+irYesRKa+A+sR+RvKGrFvk +
  Potri.003G166000.1 450 RGDAMQRYKEKKKTRRYDKHIRYESRKARADSRKRVKGRFVKTT 493
                         6789*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-12956IPR000315B-box-type zinc finger
PROSITE profilePS5011910.011956IPR000315B-box-type zinc finger
CDDcd000211.61E-71256No hitNo description
PROSITE profilePS501199.5565299IPR000315B-box-type zinc finger
CDDcd000219.36E-65685No hitNo description
SMARTSM003363.35799IPR000315B-box-type zinc finger
PfamPF062031.3E-16450492IPR010402CCT domain
PROSITE profilePS5101714.951450492IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MVTHNSKTKE TVPCDFCSEQ TAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRAQICDNC  60
NSELVSVRCA TDNLVLCQEC DWDAHGSCSV SASHDRTIIE GFSGCPTALD LASIWGFDLE  120
EKKQEPFQDL MVPNENSNNG NRNVDNVMVF GNVSKSPSCG KYKHVIYKQL VELLKRDLMG  180
GGGGGGEGGG GGDDEGGDFG DGEGCDFGGG DGREGENLVP ETQSRSAWRE GVGFGNGNGN  240
GNGGRFGNDN VGGGGSDGNV RGEQLLHEQM PFTSLLMLPT EVGVKSNGKL IGEDIMWDSN  300
ANAHGTQIWD FHLGQLRSHD ESGQLEIEYG ANDAGFVIKN FSEPMKETSL TNTKMLGNMY  360
QMNCSIVHDD MASFNNNLNN NLTSSQGPAT SESNNLPIAR VLSGTAFCKP KCSGSSKDVQ  420
FMEQSILVRG EGFKTEAATK VDMELLVRNR GDAMQRYKEK KKTRRYDKHI RYESRKARAD  480
SRKRVKGRFV KTTEAPDC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G166000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2977057e-45KC297705.1 Populus tomentosa COL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452316.10.0zinc finger protein CONSTANS-LIKE 15 isoform X1
TrEMBLA0A2K2BT820.0A0A2K2BT82_POPTR; Uncharacterized protein
STRINGcassava4.1_006085m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Representative plantOGRP5453813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.13e-63B-box type zinc finger protein with CCT domain