PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G163000.2 | ||||||||
Common Name | POPTR_0003s16150g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 315aa MW: 34643.8 Da PI: 7.1524 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.9 | 5.5e-28 | 43 | 137 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs +++++g++r+p+qC+++w+nl+++ykkike+e + ++e++s + + Potri.003G163000.2 43 RWTRQEILVLIQGKRVAENRVRRGRasgmgigpgQVEPKWASVSTYCKKHGVNRGPVQCRKRWSNLAGDYKKIKEWEASIRDETESFWFMR 133 8**********************97778888888**********************************************99999999888 PP trihelix 83 dqle 86 ++l+ Potri.003G163000.2 134 NDLR 137 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.1E-12 | 43 | 131 | No hit | No description |
PROSITE profile | PS50090 | 6.342 | 43 | 109 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 43 | 108 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MALEQQLNLT PTQNSVDGER TNGVDTSIRD GGDDGNKAPR LPRWTRQEIL VLIQGKRVAE 60 NRVRRGRASG MGIGPGQVEP KWASVSTYCK KHGVNRGPVQ CRKRWSNLAG DYKKIKEWEA 120 SIRDETESFW FMRNDLRREK KLPGFFDREV YDILDGGGGT VQGLALALAP SSAAVEAETI 180 AEGVVFDSGR SAAAEDGLFS DFEQEEGGRS PEAVVKELQP IKAARPSTNP EMGSASHEDR 240 KRKRFAIDGG EETISSHSHL IHVLERNGKM LTAQLEAQNT NFQLDREQRK DHADGLVAVL 300 NKLADALGKI ADKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G163000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453018.1 | 0.0 | trihelix transcription factor ASR3 isoform X4 | ||||
Swissprot | Q8VZ20 | 1e-117 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | U5GJI3 | 0.0 | U5GJI3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s16150.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-117 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G163000.2 |
Entrez Gene | 7481179 |
Publications ? help Back to Top | |||
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