PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.003G155700.1 | ||||||||
Common Name | POPTR_0003s15440g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 38430.4 Da PI: 7.0197 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.8e-18 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+++Ede+l+++++ +G g+W+++++ g+ R++k+c++rw +yl Potri.003G155700.1 27 RGLWSPDEDEKLIKYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 74 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++v+ +++lG++ W+ Ia++++ gRt++++k++w++ Potri.003G155700.1 80 RGSFTAQEESIIVEIHRMLGNR-WAQIAKHLP-GRTDNEVKNFWNS 123 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 18 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.886 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.19E-29 | 25 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-13 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-16 | 27 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.13E-11 | 30 | 74 | No hit | No description |
PROSITE profile | PS51294 | 25.18 | 75 | 129 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 78 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-15 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.88E-11 | 82 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MVSCDDMQEG LGNKTGHQCC SKRKVKRGLW SPDEDEKLIK YITTHGHGSW SSVPKLAGLQ 60 RCGKSCRLRW INYLRPDLKR GSFTAQEESI IVEIHRMLGN RWAQIAKHLP GRTDNEVKNF 120 WNSCIKKKLI AQGLDPKTHN LLSNNYKHNN NNNACELISY QYSHQQTTST FTVDSQINDT 180 SMDMKAPLIP FPTIPPVPDT NPYPPLLHKF SSISTCEYQN PNTLAFLESG SKSSIGSVPV 240 SSSTSHPSEF GMLDETCMWA GGYELIQSIK SEKEQPEQQV ELTIEKTNEL IGAGQNMVAS 300 FETSTFDFDF LESTLLPCGM YYNPSPIVQP AWNSWALQEK K* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 27 | 129 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.003G155700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303715.1 | 0.0 | transcription factor MYB86 | ||||
Swissprot | Q8LPH6 | 2e-68 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | B9GYG9 | 0.0 | B9GYG9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s15440.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12720.1 | 7e-79 | myb domain protein 67 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.003G155700.1 |
Entrez Gene | 7465373 |