PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G151000.1
Common NamePOPTR_0003s15060g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 235aa    MW: 26040 Da    PI: 4.756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G151000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17109159255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+      r++lg+f++  +Aaka++ a+ k++g
  Potri.003G151000.1 109 HYRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTFDSDTDAAKAYDCAAFKMRG 159
                         7********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-31108168IPR001471AP2/ERF domain
PfamPF008471.2E-12109159IPR001471AP2/ERF domain
SMARTSM003801.8E-35109173IPR001471AP2/ERF domain
PROSITE profilePS5103224.329109167IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22109168IPR016177DNA-binding domain
CDDcd000181.48E-29109167No hitNo description
PRINTSPR003673.4E-13110121IPR001471AP2/ERF domain
PRINTSPR003673.4E-13149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MATPEESSTL ELIRQHLLGD FISTDEFISN LESSIASVSV KLESSLSGSE PNSPISDQSY  60
HSTPETYSFE IKPEIIDFTP PEPVFSGSSN QYPPPEPVKM TDKGETVRHY RGVRRRPWGK  120
FAAEIRDPTR KGSRVWLGTF DSDTDAAKAY DCAAFKMRGR KAILNFPSEA GLSIPPPATG  180
RKRRRSKGEE VLPESVDVST ENWNLKWSGE VEEGVSDEEQ LSPLTQETML ARLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-27108167160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184RKRRR
2180185RKRRRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G151000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165940.0AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385827.11e-171ethylene-responsive transcription factor ERF106
SwissprotQ9LY054e-50EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLB9NBR01e-170B9NBR0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15060.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-51ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]