PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G150800.1 | ||||||||
Common Name | POPTR_0003s15040g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 31796.8 Da PI: 6.9538 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.7e-20 | 129 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka++ a+ +l+g Potri.003G150800.1 129 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDSAAFRLRG 179 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 128 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.645 | 129 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.67E-32 | 129 | 187 | No hit | No description |
Pfam | PF00847 | 1.7E-14 | 129 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 129 | 188 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-37 | 129 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-13 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-13 | 169 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MASFDEASAL ELIREHLLTD FASMDSLITN LDDLCSTSSS CITTDYIKTE STEFDPFNQS 60 EHPQPKLQSQ SSIESKPQSS PKSPSTLSQR KPSMIKNIAI PPPATLNMTP QVVQPVVIKA 120 DVSSEQERHY RGVRRRPWGK YAAEIRDPNK KGARVWLGTF DTAIEAAKAY DSAAFRLRGS 180 KAILNFPLEA GKSNSQQPEQ FLETSSKKRK IEEIESSMES TGSVITNKVA KRESSSPETE 240 VKAAATEPLT PSSWKGFWDG EVMGIFNVPP LSPLSPHPSF GYSRLMVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-30 | 128 | 188 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.582 | 0.0 | bud| leaf| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G150800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216594 | 0.0 | AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385825.1 | 0.0 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | B9NBQ9 | 0.0 | B9NBQ9_POPTR; ERF family protein | ||||
STRING | POPTR_0003s15040.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 3e-59 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G150800.1 |
Entrez Gene | 18097072 |