PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G149400.1 | ||||||||
Common Name | POPTR_0003s14920g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 148aa MW: 17085.7 Da PI: 9.1346 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.3 | 2.6e-22 | 7 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p G+rF+P+ el+v+yL kkv++k+l++ + i e+d+y+ ++ + ++e +e+y F+k +kk + g++k r+ ksg+Wk t k+ke Potri.003G149400.1 7 PLGYRFKPNSIELLVHYLLKKVKRKPLPC-DSIIECDLYNNSTEEWWEiLKNSEAEEIYCFTKLKKKGHGGSNKDRVSKSGTWKGTQKTKE 96 89***************************.779999*999866665431234466799********************************* PP NAM 92 vlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++++ ++ +vg k+ + f + + + +m+ey+l Potri.003G149400.1 97 IYVHskgHDMQVGSKRAFRFMPKsSIGFEIDGKVLMDEYQL 137 **987777778*********943133333456677777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-22 | 3 | 140 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.883 | 6 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-13 | 7 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MESTRIPLGY RFKPNSIELL VHYLLKKVKR KPLPCDSIIE CDLYNNSTEE WWEILKNSEA 60 EEIYCFTKLK KKGHGGSNKD RVSKSGTWKG TQKTKEIYVH SKGHDMQVGS KRAFRFMPKS 120 SIGFEIDGKV LMDEYQLACD LLHGIESP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 31 | LKKVKRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G149400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | U5GN69 | 1e-106 | U5GN69_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0003s14920.1 | 1e-107 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17637 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-15 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G149400.1 |
Entrez Gene | 18097067 |