PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G142100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 700aa MW: 77703.6 Da PI: 6.7926 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.2 | 3.7e-24 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvlt sd++++g +++ +k+a+e+ ++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + Potri.003G142100.1 131 FCKVLTASDTSTHGGFSVLRKHASEClppldMIQPIPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--R 219 99****************************9555555669************************************************..4 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Potri.003G142100.1 220 GENGELRVGVRR 231 49999*****98 PP | |||||||
2 | Auxin_resp | 106.3 | 3.5e-35 | 257 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st + F v+Y+Pr+ s+F+++++k+++a+++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p +W++SkWrsLk Potri.003G142100.1 257 ASHAISTLTLFVVYYKPRT--SQFIISLNKYLEAVNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-HWNDSKWRSLK 336 689***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-39 | 122 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-40 | 123 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-21 | 129 | 231 | No hit | No description |
SMART | SM01019 | 5.6E-24 | 131 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.196 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-22 | 131 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-32 | 257 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.1E-12 | 550 | 676 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 8.34E-13 | 580 | 663 | No hit | No description |
PROSITE profile | PS51745 | 26.72 | 587 | 668 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MMAMNRGGGG GSFSQANSEG CGEDDLYTEL WKACAGPLVD VPKRGERVFY FPQGHMEQLE 60 ASTNQELNQR VPLFNLPSKI LCRVINTQLL AEQETDEVYA QITLLPESDQ IETTSPDPCP 120 SEPPRPTVHS FCKVLTASDT STHGGFSVLR KHASECLPPL DMIQPIPTQE LVAKDLHGYE 180 WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ENGELRVGVR RVARQQSSMP 240 SSVISSQSMH LGVLATASHA ISTLTLFVVY YKPRTSQFII SLNKYLEAVN NKFAVGMRFK 300 MRFEGEDSPE RRFSGTIVGV EDFSPHWNDS KWRSLKVQWD EPASISRPDR VSPWEIEPCV 360 ASVPANLSQP VQPKNKRPRP PIEIPAFDLS STASTPWNSG LAQSCDLTQL SVTGEGKRNE 420 NHVMWHQKQT DINGHSNSMT RTQGEGGWLS SPHVNVSQHL FQEAMEDSKS VSPWPVFVGY 480 STPLSSKSKN DPIPDPSNKG RKYEVPTSYR LFGFDLVNQS TSSSSPIEKV SAQPISVSRG 540 ATDGRVLAAL PAVDSDQKHE VSKEKKPEQL HGSSKEIQSK QSSTSTRSRT KVQLQGIAVG 600 RAVDLTLIKG YGQLIDELEQ LFDIKGQLHP RDKWEIVYTD DEGDMMLVGD DPWPEFCNMV 660 RRIFICSSQD VKKMSPGSKL PMLALEGEGT VLSSDSAEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-179 | 20 | 358 | 13 | 354 | Auxin response factor 1 |
4ldw_A | 1e-179 | 20 | 358 | 13 | 354 | Auxin response factor 1 |
4ldw_B | 1e-179 | 20 | 358 | 13 | 354 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 375 | 379 | KRPRP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G142100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453551.1 | 0.0 | auxin response factor 9 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A2K2B707 | 0.0 | A0A2K2B707_POPTR; Auxin response factor | ||||
STRING | XP_002518850.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G142100.1 |