PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G139300.1
Common NamePOPTR_0003s13910g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 312aa    MW: 34449.8 Da    PI: 9.5889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G139300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18106155255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ 
  Potri.003G139300.1 106 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRS 155
                         59******9.**********954...5************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.14E-16105165No hitNo description
SMARTSM003801.2E-33106169IPR001471AP2/ERF domain
PROSITE profilePS5103222.879106163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-30106164IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22106163IPR016177DNA-binding domain
PfamPF008471.6E-12107154IPR001471AP2/ERF domain
PRINTSPR003673.9E-10107118IPR001471AP2/ERF domain
PRINTSPR003673.9E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MERMQENNSS FAFNTADIGS SLSQLILAGG TNTLDSIFSH CQPARSLTSP AFEPLGSSVY  60
LRQRDLLQKF SEENRINTSL SHNLQTNPLQ NPVHSSNYLA PTKKKLYRGV RQRHWGKWVA  120
EIRLPQNRMR VWLGTYDTAE AAAYAYDRAA YKLRSQYARL NFPNLKDPAK LGFTDCSKLN  180
ALKNTVDAKI QAIFQKVKKE RAKKNAAKKS NVDGKSTGSK KPVKVDSNAS TPSPASSSSF  240
STLFSGDNWG GSELVSPAVS EDGFWKCESS SSPSVSTDCP VMVPQAMEFE DCSLARMPSY  300
DPELIWEVLA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-19105163160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-19103163263ATERF1
3gcc_A5e-19103163263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120250.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G139300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304554.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W22e-65ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLB9GXH60.0B9GXH6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13910.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.17e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]