PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G138600.1
Common NamePOPTR_0003s13840g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 343aa    MW: 38391.2 Da    PI: 5.0765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G138600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29131191259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++eitY+g+H++ 
  Potri.003G138600.1 131 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPTIFEITYRGTHTCA 191
                         8***************************98899*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.033125188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-28127191IPR003657WRKY domain
SuperFamilySSF1182906.8E-26129191IPR003657WRKY domain
SMARTSM007742.4E-40130192IPR003657WRKY domain
PfamPF031063.3E-27131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MESGLCWEQQ TLIAELVQGM ELAKQLRAHL NATSSVESRD ELLQRILASY ERALLILNWG  60
GSMGQPQSVG VSAGVPESPI SINGSSRSDE FDGGVKDNQG YNEASKKRKT TPRWTDHVRV  120
SPENGLEGPH DDGYSWRKYG QKDILGAKYP RSYYRCTYRN TQNCWATKQV QRSDEDPTIF  180
EITYRGTHTC AHGNQSIPSP SSPEKQEKKQ KNTNNNYQQQ QSQQALYNFQ NSLKVITEDL  240
DNKEMVSPFS FPSAYGCSKN VSSYSPSFIS PATPEPTHYS VSPFQMNNFV GAYNLQHLES  300
DFTEIISTNT SATNSPIVDL DFSLDQVELD PNFPFDTPGF FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18131190968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G138600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774410.0GQ377441.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304549.10.0probable WRKY transcription factor 41
TrEMBLB9GXG90.0B9GXG9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-76WRKY family protein