PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G132700.1
Common NamePOPTR_0003s13250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 331aa    MW: 37033.6 Da    PI: 5.4546
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G132700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29153211259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++prsYYrC+s  gC ++k++ers++dp++++itY+ eH h 
  Potri.003G132700.1 153 SDMWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQMERSRTDPSTFIITYTAEHSHA 211
                         79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-30138213IPR003657WRKY domain
SuperFamilySSF1182903.27E-25146213IPR003657WRKY domain
PROSITE profilePS5081131.422147213IPR003657WRKY domain
SMARTSM007742.0E-33152212IPR003657WRKY domain
PfamPF031065.9E-24154210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MMDEFVCMED SWDLHAVVRS GSSTNYEDFA NITNNPPSLF APLSFYQDEL LNFQETPTDF  60
DGLDGLYKPL YPLLHQTFNS PQSNILSTSI STTSISVPKE VKERQKVQKK KPVSPESATF  120
ANTVDATSAA KSKRRKNQHK KVVQHVKEDG LSSDMWAWRK YGQKPIKGSP YPRSYYRCSS  180
LKGCLARKQM ERSRTDPSTF IITYTAEHSH AHPTRRSSLA GSTRIKPSMP KEATKNIEPN  240
MPTIKDELSP NFDGVLSPTT PSVTSIEDEL VQNVCIKNEE LLDQGQVLDE IALPDILFSD  300
ELFPSIEDLE GLLLDEFADC RSSNIPTTSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-18143213877Probable WRKY transcription factor 4
2lex_A6e-18143213877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G132700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303610.10.0WRKY transcription factor 22
TrEMBLB9GWV80.0B9GWV8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-33WRKY family protein