PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G129800.1
Common NamePOPTR_0003s12990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 644aa    MW: 73512.6 Da    PI: 6.4616
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G129800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-07537584246
                         SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 
                         +rWTteE+++++d v+  +       W+   ++++ ++t+++++s++++
  Potri.003G129800.1 537 LRWTTEEEKRFKDMVRFNPQSagkcFWDNKRKYFP-RKTREELISYYFN 584
                         79****************9889999999999****.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010142.5E-855145No hitNo description
PROSITE profilePS5101115.54558149IPR001606ARID DNA-binding domain
SMARTSM005019.7E-759150IPR001606ARID DNA-binding domain
SuperFamilySSF467743.14E-1377149IPR001606ARID DNA-binding domain
PfamPF013886.8E-881145IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.605.0E-1181158IPR001606ARID DNA-binding domain
CDDcd001678.56E-5538584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAGWLILTNG SSLDCPDDII YRYKGGGGCP DINHPMKDEI KECIVVDDSD EDDCDCEDKV  60
VCLFDEVVSI FLNEAADGGC IRPIPALLGD GQSLDLFKLF WVVRKRGGFD LVNGFWSFVA  120
KELGLDLRFS PSVKLIYIKY LYELEKCMKI CSDEKLRKEM HQCDGNLSFS LLELEMQFRS  180
LLLLRCDRKQ GDGKFASLGY KVNGRYIETD TGKRKIGLLG TKDVHRIHND VGDRNGDDDD  240
EKFHGEKENY CDDSDDDVVI LDPSIAKKEF NSRKRKRESL TRMLNWVIQI AKCPDDPSIR  300
VIHRGDELWS QAIRAREALL QRRHVNPNIE QSLVQVCNMN LQNNQKMHPS MFEDVSFLSE  360
QSAERSRCSK RHPAIVKPHL CYCCNSCSAH QSKSASLLKC ENACKEQEHD LKQELVIDDL  420
SSKHTTLSGS GDKHVRRHVA VGPLFQAEVP EWIGVVSESA SKWLGTRLWP LECENNNAPV  480
AMDPIGKGGI SLCGCQLPGS VGCVRFHIAE KRMKLKLELG PLFYHWRFDH MGEEVSLRWT  540
TEEEKRFKDM VRFNPQSAGK CFWDNKRKYF PRKTREELIS YYFNAYLVQR RSYQNRVTPK  600
YIDSDDDETK FGSLSDAYGH EALTVPGANM LICSENKQCT DFT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G129800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304507.30.0AT-rich interactive domain-containing protein 2
TrEMBLA0A2K2B6980.0A0A2K2B698_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF399678
Representative plantOGRP301445